Anil Wipat

About

Professor of Integrative Bioinformatics at Newcastle University, co-director of the Interdisciplinary Computing and Complex BioSystems (ICOS) research group. Research focuses on data integration in bioinformatics, applying strategies to systems and synthetic biology, microbial genomics, and metagenomics. Interested in model-driven design for synthetic biology and developing data standards like SBOL.

Selected publications

• Sadegh S, Skelton J, Anastasi E, Maier A, Adamowicz K, Moller A, Kriege NM, Kronberg J, Haller T, Kacprowski T, Wipat A, Baumbach J, Blumenthal DB. Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond. Nature Communications 2023
• Huang Y, Sinha N, Wipat A, Bacardit J. A knowledge integration strategy for the selection of a robust multi-stress biomarkers panel for Bacillus subtilis. Synthetic and Systems Biotechnology 2023
• Ling W-L, Yeo JY, Ng Y-L, Wipat A, Gan SK-E. More Than Meets the Kappa for Antibody Superantigen Protein L (PpL). Antibodies 2022
• Yang B, Misirli G, Wipat A, Hallinan J. Modelling the fitness landscapes of a SCRaMbLEd yeast genome. BioSystems 2022
• James K, Alsobhe A, Cockell SJ, Wipat A, Pocock M. Integration of probabilistic functional networks without an external Gold Standard. BMC Bioinformatics 2022
• Mori K, Fukui K, Amatsu R, Ishikawa S, Verrone V, Wipat A, Meijer WJJ, Yoshida K-I. A novel method for transforming Geobacillus kaustophilus with a chromosomal segment of Bacillus subtilis transferred via pLS20-dependent conjugation. Microbial Cell Factories 2022
• Crowther M, Wipat A, Goni-Moreno A. A Network Approach to Genetic Circuit Designs. ACS Synthetic Biology 2022
• Mlslrll G, Yang B, James K, Wipat A. Virtual Parts Repository 2: Model-Driven Design of Genetic Regulatory Circuits. ACS Synthetic Biology 2021
• Konur S, Mierla L, Fellermann H, Ladroue C, Brown B, Wipat A, Twycross J, Dun BP, Kalvala S, Gheorghe M, Krasnogor N. Toward Full-Stack In Silico Synthetic Biology: Integrating Model Specification, Simulation, Verification, and Biological Compilation. ACS Synthetic Biology 2021
• Huang Y, Smith W, Harwood C, Wipat A, Bacardit J. Computational Strategies for the Identification of a Transcriptional Biomarker Panel to Sense Cellular Growth States in Bacillus subtilis. Sensors 2021